CUBIC-Atlas and CUBIC-Cloud data

Some of the reference data reported in CUBIC-Atlas and CUBIC-Cloud paper is provided here. Interactive image viewer is powered by CATMAID

Downloads

CUBIC-Atlas

CUBIC-Atlas is distributed under Creative Commons BY-NC-ND 4.0 license.

• CUBIC-Atlas (version 1.2)
• CUBIC-Atlas (version 1.1)
• CUBIC-Atlas (version 1.0)

CUBIC-Informatics test data

• CUBIC-Informatics test data

CUBIC-Cloud

• PV immunostaining whole-brain data
• SST immunostaining whole-brain data
• ChAT immunostaining whole-brain data
• Th immunostaining whole-brain data
• Iba1 immunostaining whole-brain data (LPS injection)
• 6E10 immunostaining whole-brain data (APP(NL-G-F) tg-mouse)
• c-Fos immunostaining whole-brain data (LPS injection)
• c-Fos immunostaining whole-brain data (MK-801 injection)
• Rabies virus-based monosynaptic tracing whole-brain data (Injection to ARH of Kiss1-Cre mouse)

ecc demo data

• ChAT immunostaining (Whole brain)
• Iba1 immunostaining (Whole brain)

Publications

For the details of CUBIC-Atlas and CUBIC-Cloud software/data, please refer to the following papers

• Murakami et al., Nature Neuroscience (2018) (version 1.0 was reported here)
• Matsumoto et al., Nature Protocols (2019) (version 1.2 was reported here)
• Mano et al., bioRxiv (2020) (version 1.1 was reported here)